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AlphaGenome 2 interprets DNA variants at cell-type resolution

Google DeepMind’s new model predicts how DNA changes affect hundreds of human cell types and states; it has not been validated for clinical use.

2 min readAI RadarSource: Google DeepMind official announcementsu
AI Radar cover illustration for AlphaGenome 2 interprets DNA variants at cell-type resolution

AT A GLANCE

Key points

  • Trained on more than 107 million single-cell profiles from 68 tissues.
  • Available through the AlphaGenome API for non-commercial research.
  • Not validated or approved for clinical or diagnostic use.

What is changing?

Google DeepMind has announced AlphaGenome 2, a model that predicts how DNA sequences and variants affect specific human cell types. Its conditional architecture takes a one-million-letter DNA sequence together with a target tissue, cell type or state. The model produces outputs such as gene expression, chromatin accessibility, histone modifications and DNA methylation for one biological condition at a time. Its training data includes more than 107 million single-cell profiles from 68 tissues.

In the company’s TenK10K evaluation, AlphaGenome 2 identified 30% of causal variants versus 16% for the previous model and specialized tools, and 43% of directional gene effects versus 23%. The model is available today through the AlphaGenome API for non-commercial research and in private preview for commercial research. DeepMind explicitly says it has not been validated or approved for clinical or diagnostic use.

Explore the original sources

Source date: 11 November 2026.
Published by AI Radar: 11 Nov 2026, 19:12 (Istanbul, UTC+3). Updated: 11 Nov 2026, 19:13.

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